Latent fusion protein

ABSTRACT

The present invention provides a method for providing latency to a pharmaceutically active agent. The method has application in overcoming the toxic effect of systemic administration of potent biological agents. The method comprises associating a fusion protein comprising a latency associated peptide and a proteolytic cleavage site with a pharmaceutically active agent. The fusion protein also has application in providing site specific activation to a latent pharmaceutically active agent.

CROSS REFERENCE TO RELATED APPLICATION

This application is a divisional of U.S. patent application Ser. No. 09/756,283, filed Jan. 9, 2001, now U.S. Pat. No. 6,942,853, issued on Sep. 13, 2005, and is fully incorporated herein by reference.

The present invention relates to the use of DNA constructs, and proteins encoded by the constructs, in medicine with particular application in gene therapy. The present invention also relates to methods of providing latency to pharmaceutically active agents.

Most cytokines and growth factors are expressed under tight control mechanisms. Their gene expression is regulated by environmental stimuli such as infection, cell-cell interactions change in extracellular matrix composition and interactions with adhesion molecules or via stimulation with other cytokines.

In addition to the control at the transcriptional and post-transcriptional level, some cytokines are not released into the medium unless a second signal activates the cell. A third level of regulation for cytokine activity is found in molecules which are secreted in a latent form wand become “activated” by releasing the cytokine moiety where processes of inflammation wound healing and tissue repair takes place (Khalil N, Microbes and Infection, 1, 1255–1263 (1999). In this latter respect, transforming growth factor beta (TGFβ) has received greatest attention.

TGFβ is synthesized as a dimeric latent cytokine composed of an amino terminal latency associated protein (LAP) and the active TGFβ cytokine at its COOH terminal end (Roberts and Sporn, Peptide Growth Factors and their Receptors: Sporn, M B and Roberts, A B, Springer-Verlag, 419–472 (1996); Roth-Eicchorn et al., Hepatology, 28 1588–1596 (1998)). The precursor peptide contains a signal peptide (residues 1–29) necessary for protein secretion and guiding the molecule through the Golgi apparatus to become processed by proteolytic cleavage and glycosylation. The LAP domain is separated from TGFβ by proteolytic cleavage at arginines (277–278). Mature TGFβ begins at alanine 279. The LAP, in addition to protect TGFβ, contains important residues necessary for the interaction with other molecules. Mutations in the LAP domain have recently been associated with the autosomal dominant Camurati-Engelmann disease (Janssens et al., Nature Genetics, 26, 273:275 (2000). Cysteines 224 and 226 are important in the intermolecular disulphide bond between two LAPs. Their mutation to serine renders the molecule “active” (Sanderson et al., Proc. Natl. Acad. Sci. USA, 92, 2572–2576 (1995); Brunner et al., Mol. Endocrinol. 6, 1691–1700 (1992); Brunner et al. J. Biol. Chem, 264, 13660–13664 (1989)). The RGD motif (245–247) facilitates the interaction with integrins (Munger et al., Mol, Biol. of the Cell, 9, 2627–2638 (1998; Derynck R, TIBS, 19, 548–553 (1994)). Nucleic acid encoding TGFβ is described in U.S. Pat. No. 5,801,231.

In most cell types studied, including those of mesenchymal, epithelial and endothelial origin, TGFβ is secreted in a latent form consisting of TGFβ and its latency associated peptide (LAP) propeptide dimers, covalently linked to latent TGFβ-binding proteins (LTBPs). LTBPs are also needed for the secretion and folding of TGFβ (Miyazano et al., EMBO J. 10, 1091–1101 (1991); Miyazano et al., J. Biol. Chem. 267, 5668–5675 (1992); Eklov et al., Cancer Res. 53, 3193–3197 (1993)). Cysteine 33 is important for the disulphide bridge with the third 8 cysteine-rich repeat of latent TGFβ binding protein (LTBP) (Saharinen et al., The EMBO Journal, 15, 245–253 (1996). Modification of LTBP by enzymes such as thrombospondin (Schultz et al., The Journal of Biological Chemistry, 269, 26783–26788 (1994); Crawford et al., Cell, 93, 1159–1170 (1998)), transglutaminase (Nunes et al., J. Cell, Biol. 136, 1151–1163 (1997); Kojina et al., The Journal of Cell Biology, 121, 439–448 (1993)) and MMP9, MMP2 (Yu and Stamenkovic, Genes and Dev, 14, 163–176 (2000)) could release the active portion of TGFβ from the latent complex.

Cytokines are natural products serving as soluble local mediators of cell-cell interactions. They have a variety of pleiotropic actions, some of which can be harnessed for therapeutic purposes. Targeting of cytokines to specific cell types using scFv (Lode et al., Pharmacol. Ther, 80, 277–292 (1998)) and vWF (Gordon et al., Human Gene Therapy, 8, 1385–1394 (1997)) have focused entirely on the active cytokine moiety of the cytokine complex.

Pharmacologically active proteins or other medicines based on such agents, which have to be administered at very high concentrations systemically in order to achieve biologically effective concentrations in the tissue being targeted, tend to give rise to undesirable systemic effects, for example toxicity, which limit their use and efficacy.

The present inventors have developed a system for overcoming the toxic effect of systemic administration of potent biological agents.

According to a first aspect of the invention there is provided the use of a fusion protein comprising a latency associated peptide (LAP) and a proteolytic cleavage site for providing latency to a pharmaceutically active agent.

According to a second aspect of the invention there is provided a method of providing latency to a pharmaceutically active agent comprising associating a fusion protein comprising a latency associated peptide (LAP) and a proteolytic cleavage site with said pharmaceutically active agent.

The term “protein” in this text means, in general terms, a plurality of amino acid residues joined together by peptide bonds. It is used interchangeably and means the same as peptide, oligopeptide, oligomer or polypeptide, and includes glycoproteins and derivatives thereof. The term “protein” is also intended to include fragments, analogues and derivatives of a protein wherein the fragment, analogue or derivative retains essentially the same biological activity or function as a reference protein.

The fragment, derivative or analogue of the protein may be (i) one in which one or more of the amino acid residues are substituted with a conserved or non-conserved amino acid residue (preferably, a conserved amino acid residue) and such substituted amino acid residue may or may not be one encoded by the genetic code, or (ii) one in which one or more of the amino acid residues includes a substituent group, or (iii) one in which the mature polypeptide is fused with another compound, such as a compound to increase the half life of the polypeptide (for example, polyethylene glycol), or (iv) one in which the additional amino acids are fused to the mature polypeptide, such as a leader or secretory sequence which is employed for purification of the polypeptide. Such fragments, derivatives and analogues are deemed to be within the scope of those skilled in the art from the teachings herein.

Particularly preferred are variants, analogues, derivatives and fragments having the amino acid sequence of the protein in which several e.g. 5 to 10, 1 to 5, 1 to 3, 2, 1 or no amino acid residues are substituted, deleted or added in any combination. Especially preferred among these are silent substitutions, additions and deletions, which do not alter the properties and activities of the protein of the present invention. Also especially preferred in this regard are conservative substitutions.

An example of a variant of the present invention is a fusion protein as defined above, apart from the substitution of one or more amino acids with one or more other amino acids. The skilled person is aware that various amino acids have similar properties. One or more such amino acids of a substance can often be substituted by one or more other such amino acids without eliminating a desired, activity of that substance.

Thus the amino acids glycine, alanine, valine, leucine and isoleucine can often be substituted for one another (amino acids laving aliphatic side chains). Of these possible substitutions it is preferred that glycine and alanine are used to substitute for one another (since they have relatively short side chains) and that valine, leucine and isoleucine are used to substitute for one another (since they have larger aliphatic side chains which are hydrophobic). Other amino acids which can often be substituted for one another include: phenylalanine, tyrosine and tryptophan (amino acids having aromatic side chains); lysine, arginine and histidine (amino acids having basic side chains); aspartate and glutamate (amino acids having acidic side chains); asparagine and glutamine (amino acids having amide side chains); and cysteine and methionine (amino acids having sulphur containing side chains).

Substitutions of this nature are often referred to as “conservative” or “semi-conservative” amino acid substitutions.

Amino acid deletions or insertions may also be made relative to the amino acid sequence for the fission protein referred to above. Thus, for example, amino acids which do not have a substantial effect on the activity of the polypeptide, or at least which do not eliminate such activity, may be deleted. Such deletions can be advantageous since the overall length and the molecular weight of a polypeptide can be reduced whilst still retaining activity. This can enable the amount of polypeptide required for a particular purpose to be reduced for example, dosage levels can be reduced.

Amino acid insertions relative to the sequence of the fusion protein above can also be made. This may be done to alter the properties of a substance of the present invention (e.g. to assist in identification, purification or expression, as explained above in relation to fusion proteins).

Amino acid changes relative to the sequence given in a) above can be made using any suitable technique e.g. by using site-directed mutagenesis.

It should be appreciated that amino acid substitutions or insertions within the scope of the present invention can be made using naturally occurring or non-naturally occurring amino acids. Whether or not natural or synthetic amino acids are used, it is preferred that only L-amino acids are present.

A protein according to the invention may have additional N-terminal and/or C-terminal amino acid sequences. Such sequences can be provided for various reasons, for example, glycosylation.

The term “fusion protein” in this text means, in general terms, one or more proteins joined together by chemical means, or by peptide bonds through protein synthesis or both.

The latency associated peptide (LAP) of the present invention may include, but is not limited to, the coding sequence for the precursor domain of TGFβ or a sequence which is substantially identical thereto.

“Identity” as known in the art is the relationship between two or more polypeptide sequences or two or more polynucleotide sequences, as determined by comparing the sequences. In the art, identity also means the degree of sequence relatedness between polypeptide or polynucleotide sequences, as the case may be, as determined by the match between strings of such sequences. While there exist a number of methods to measure identity between two polypeptide or two polynucleotide sequences, methods commonly employed to determine identity are codified in computer programs. Preferred computer programs to determine identity between two sequences include, but are not limited to, GCG program package (Devereux, et al., Nucleic acids Research, 12, 387 (1984), BLASTP, BLASTN, and FASTA (Atschul et al., J. Molec. Biol. 215, 403 (1990).

The LAP of the present invention may comprise the precursor domain of TGFβ, for example, the precursor peptide of TGFβ-1, 2 or 3 (from human) (Derynck et al., Nature, 316, 701–705 (1985); De Martin et al., EMBO J. 6 3673–3671 (1987); Hanks et al., Proc. Natl. Acad. Sci. 85, 79–82 (1988); Derynck et al., EMBO J. 7, 3737–3743 (1988); Ten Dyke et al., Proc. Natl. Acad. Sci. USA, 85, 4715–4719 (1988)) TGFβ-4 (from chicken) (Jakowlew et al., Mol. Endocrinol. 2, 1186–1195 (1998)) or TGFβ-5 (from xenopus) (Kondaiah et al., J. Biol. Chem. 265, 1089–1093 (1990)). The term “precursor domain” is defined as a sequence encoding a precursor peptide which does not include the sequence encoding the mature protein. The amino acid sequences of the precursor domain of TGFβ 1, 2, 3, 4 and 5 (Roberts and Sporn, Peptide Growth Factors and their Receptors: Sporn, M B and Roberts, A B, Springer-Verlag, Chapter 8, 422 (1996)) are shown in FIG. 3.

Preferably, the amino acid sequence of the LAP has at least 50% identity, using the default parameters of the BLAST computer program (Atschul et al., J. Mol. Biol. 215, 403–410 (1990) provided by HGMP (Human Genome Mapping Project), at the amino acid level, to the precursor domain of TGFβ 1, 2, 3, 4 or 5 (Roberts and Sporn, Peptide Growth Factors and their Receptors, Sporn, M B and Roberts, A B, Springer-Verlag, Chapter 8, 422 (1996)) as shown in FIG. 3. More preferably, the LAP may have at least 60%, 70%, 80%, 90% and still more preferably 95% (still more preferably at least 99%) identity, at the nucleic acid or amino acid level, to the precursor domain of TGFβ 1, 2, 3, 4 or 5 as shown in FIG. 3.

The LAP may comprise the LAP of TGFβ 1, 2, 3, 4, or 5 (Roberts and Sporn, Peptide Growth Factors and their Receptors: Sporn, M B and Roberts, A B, Springer-Verlag, Chapter 8, 422 (1996)) as shown in FIG. 3.

The LAP may contain at least two, for example at least 4, 6, 8, 10 or 20 cysteine residues for the formation of disulphide bonds.

The LAP may provide a protective “shell” around the pharmaceutically active agent thereby shielding it and hindering, or preventing, its interaction with other molecules in the cell surface or molecules important for its activity.

The LAP may comprise the sequence of amino acids encoded by nucleotides 1–832 of FIG. 1 or nucleotides 598–1352 of FIG. 2 or a sequence which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, thereto.

The proteolytic cleavage site may comprise any protease specific cleavage site. The proteolytic cleavage site may include, but is not limited to, a matrix metalloproteinase (MMP) cleavage site, a serine protease cleavage site, a site cleavable by a parasitic protease derived from a pathogenic organism (Zhang et al., J. Mol. Biol. 289, 1239–1251 (1999); Voth et al., Molecular and Biochemical Parasitology, 93, 31–41 (1998); Yoshiokn et al., Folia Pharmacologica Japonica, 110, 347–355 (1997); Tort et al., Advances in Parasitology, 43, 161–266 (1999); McKerrow, International Journal for Parasitology, 29, 833–837 (1999); Young et al., International Journal for Parasitology, 29, 861–867 (1999); Coombs and Mottram, Parasitology, 114, 61–80 (1997)) or a site cleavable by the proteins of the complement cascade (Carroll, Annu. Rev. Immunol. 16, 545–568 (1998); Williams et al., Ann. Allergy, 60, 293–300 (1988)).

The MMP cleavage site may comprise any amino acid sequence which is cleavable by a MMP. The amino acid sequence of the MMP cleavage site may be encoded by nucleotides 844–861 of FIG. 1 or nucteotides 565–585 of FIG. 2 or a sequence of nucleotides which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, thereto. Preferably, the nucleic acid sequence encoding the MMP cleavage site comprises the minimum number of residues required for recognition and cleavage by MMP.

A MMP cleavage site may comprise a number of amino acid residues recognisable by MMP. Moreover, the amino acids of the MMP site may be linked by one or more peptide bonds which are cleavable, proteolytically, by MMP. MMPs which may cleave the MMP site include, but are not limited to, MMP1, MMP2, MMP3, MMP7, MMP8,MMP9 or MMP10 (Yu and Stamenkovic, Genes and Dev. 14, 163–176 (2000); Nagase and Fields, Biopolymers, 40, 399–416 (1996); Massova et al. J. Mol. Model. 3, 17–30 (1997); reviewed in Vu and Werb, Genes and Dev. 14, 2123–2133 (2000)). The sequences of the protein cleavage sites of MMP1, MMP2, MMP3, MMP7, MMP8. MMP9 and MMP10 are shown in FIG. 4.

Preferably, the proteolytic cleavage site of the present invention is cleaved at sites of inflammation and tissue remodelling. More preferably, the proteolytic cleavage site of the present invention is a MMP cleavage site e.g any one or more of MMP1, MMP2, MMP3, MMP7, MMP8, MMP9 or MMP10 as shown in FIG. 4.

The invention further provides nucleic acid encoding the fusion protein of the first and second aspects of the invention. The nucleic acid encoding the fusion protein may comprise nucleotides 1–861 of FIG. 1 or nucleotides 585–1352 of FIG. 2 or a sequence of nucleotides which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, thereto.

The present invention may further provide a “linker” peptice. Preferably the linker peptide is linked to the amino acid sequence of the proteolytic cleavage site. The linker peptide may be provided at the C terminal or N terminal end of the amino acid sequence encoding the proteolytic cleavage site. Preferably, the linker peptide is continuous with the amino acid sequence of the proteolytic cleavage site. The linker peptide may comprise the amino acid sequence encoded by nucleotides 831–843 and/or 862–873 of FIG. 1 or nucleotides 553–564 and/or 586–597 of FIG. 2 or a sequence of nucleotides which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, thereto.

The term “linker peptide” is intended to define any sequence of amino acid residues which preferably provide a hydrophilic region when contained in an expressed protein. Such a hydrophilic region may facilitate cleavage by an enzyme at the proteolytic cleavage site.

The term “latency” as used herein, may relate to a shielding effect which may hinder interaction between the fusion protein and other molecules in the cell surface. Alternatively the term latency may be used to describe a reduction in the activity (up to and including ablation of activity) of a molecule/agent associated with the fusion protein. The term latency may also relate to a stabilising effect of the fusion protein. The effect may be in full or partial, where a partial effect is sufficient to achieve the latency of the active agent.

The pharmaceutically active agent may include, but is not limited to, a growth factor (e.g. TGFβ, epidermal growth factor (EGF), platelet derived growth factor (PDGF), nerve growth factor (NGF), colony stimulating factor (CSF), hepatocyte growth factor, insulin-like growth factor, placenta growth factor); differentiation factor; cytokine e.g. interleukin, (eg. IL1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7. IL-8, IL-9, IL-10, IL-11, IL-12, IL-13, IL-14, IL-15, IL-16, IL-17, IL-18, IL-19, IL-20 or IL-21, either α or β), interferon (eg. IFN-α, IFN-β and IFN-γ), tumour necrosis factor (TNF), IFN-γ inducing factor (IGIF), bone morphogenetic protein (BMP); chemokine (eg. MIPs (Macrophage Inflammatory Proteins) e.g. MIP1α and MIP1β; MCPs (Monocyte Chemotactic Proteins) e.g. MCP1, 2 or 3; RANTES (regulated upon activation normal T-cell expressed and secreted)); trophic factors; cytokine inhibitors; cytokine receptors; free-radical scavenging enzymes e.g. superoxide dismutase or catalase; peptide mimetics; protease inhibitors; tissue inhibitor of metalloproteinase sub classes (TIMPS) and serpins (inhibitors of serine proteases). Preferably, the pharmaceutically active agent will be derived from the species to be treated e.g. human origin for the treatment of humans. Preferably, the pharmaceutically active agent is IFNβ.

The pharmaceutically active agent may comprise a chemical compound such as a chemotherapeutic agent or other synthetic drug. Alternatively, the pharmaceutically active agent may comprise a peptide nucleic acid (PNA) sequence e.g a poly-lysine sequence which binds to nucleic acids and permeabilises lipid bilayers (Wyman et al., Biological Chemistry, 379, 1045–1052 (1998)) or a KALA peptide which facilitates transfer through lipid bilayers (Wyman et al., Biochemistry, 36, 3008–3017 (1997)),

The term “associating with” in the context of the present invention is intended to include all means of association including, but not limited to, chemical cross-linking or peptide bond linkage.

In an alternative embodiment, the invention further provides the fusion protein of the present invention optionally in association with latent TGFβ binding protein (LTBP). Typically, the fusion protein is covalently linked to LTPB to form a complex. Preferably, the association is mediated by disulphide bond(s) between Cys No. 33 of LAP and the third 8 Cys residue of LTBP. The LTBP associated with the fusion protein may include, but is not limited to, LTBP 1, 2, 3 or 4 (Kanzaki et al., Cell, 61, 1051–1061 (1990); Tsuji et al., Proc. Nati. Acad. Sci. USA, 87, 8835–8839 (1990); Moren et al., J. Biol. Chem. 269, 32469–32478 (1994); Yin et al., J. Biol. Chem. 270, 10147–10160 (1995); Gibson et al., Mol. Cell. Biol. 15, 6932–6942 (1995); Saharinen et al., J. Biol. Chem. 273, 18459–18469 (1998)), or fragments of LTBP such as that containing the third 8 Cys repeat, or homologues having a sequence of amino acids or nucleotides which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, to that of LTBP. Cleavage of LTBP may release the fusion protein from the LTBP complex. Enzymes which may cleave LTBP in this manner include, but are not limited to. thrombospondin (Schultz et al., The Journal of Biological Chemistry, 269, 26783–26788 (1994); Crawford et al., Cell, 93, 1159–1170 (1998)), transglutaminase (Nunes et al., J. Cell, Biol. 136, 1151–1163 (1997); Kojima et al., The Journal of Cell Biology, 121, 439–448 (1993)) MMP9 and MMP2 (Yu and Stamenkovic, Genes and Dev, 14, 163–176 (2000)).

A third aspect of the invention provides a nucleic acid construct comprising a first nucleic acid sequence encoding a pharmaceutically active agent, a second nucleic acid sequence encoding a LAP, wherein a nucleic acid sequence encoding a proteolytic cleavage site is provided between the first and second nucleic acid sequences.

The term “nucleic acid construct” generally refers to any length of nucleic acid which may be DNA, cDNA or RNA such as mRNA obtained by cloning or produced by chemical synthesis. The DNA may be single or double stranded. Single stranded DNA may be the coding sense strand, or it may be the non-coding or anti-sense strand. For therapeutic use, the nucleic acid construct is preferably in a form capable of being expressed in the subject to be treated.

Preferably, the first nucleic acid sequence encodes the protein IFNβ. The first nucleic acid sequence may comprise the sequence of nucleotides from 874–1376 of FIG. 1 or nucleotides 598–1352 of FIG. 2, or a sequence which is substantially homologous thereto. In one embodiment of the invention, the first nucleic acid sequence encodes IFNβ from a mouse or a human.

The nucleic acid construct of the third aspect of the invention may be in the form of a vector, for example, an expression vector, and may include, among others, chromosomal, episomal and virus-derived vectors, for example, vectors derived from bacterial plasmids, from bacteriophage, from transposons, from yeast episomes, from insertion elements, from yeast chromosomal elements, from viruses such as baculo-viruses, papova-viruses, such as SV40, vaccinia viruses, adenoviruses, fowl pox viruses, pseudorabies viruses and retroviruses, and vectors derived from combinations thereof, such as those derived from plasmid and bacteriophage genetic elements, such as cosmids and phagemids. Generally, any vector suitable to maintain, propagate or express nucleic acid to express a polypeptide in a host, may be used for expression in this regard.

Preferably, the nucleic acid construct is LAP-mIFNβ as shown in FIG. 1 and schematically in FIG. 5 or mIFNβ-LAP as shown in FIG. 2 and schematically in FIG. 5.

The invention further provides a protein encoded by the nucleic acid construct of the third aspect of the invention optionally in association with latent TGFβ binding protein (LTBP) described herein. Typically, the protein encoded by the nucleic acid construct is covalently linked to LTBP to form a complex. Preferably, the association is mediated by disulphide bond(s) between Cys No. 33 of LAP and the third 8 Cys residue of LTBP.

The nucleic acid construct of the third aspect of the invention preferably includes a promoter or other regulatory sequence which controls expression of the nucleic acid. Promoters and other regulatory sequences which control expression of a nucleic acid have been identified and are known in the art. The person skilled in the art will note that it may not be necessary to utilise the whole promoter or other regulatory sequence. Only the minimum essential regulatory element may be required and, in fact, such elements can be used to construct chimeric sequences or other promoters. The essential requirement is, of course, to retain the tissue and/or temporal specificity. The promoter may be any suitable known promoter, for example, the human cytomegalovirus (CMV) promoter, the CMV immediate early promoter, the HSV thymidinekinase, the early and late SV40 promoters or the promoters of retroviral LTRs such as those of the Rous Sarcoma virus (RSV) and metallothionine promoters such as the mouse metallothionine-I promoter. The promoter may comprise the minimum comprised for promoter activity (such as a TATA elements without enhancer elements) for example, the minimum sequence of the CMV promoter.

Preferably; the promoter is contiguous to the first and/or second nucleic acid sequence.

As stated herein, the nucleic acid construct of the third aspect of the invention may be in the form of a vector. Vectors frequently include one or more expression markers which enable selection of cells transfected (or transformed) with them, and preferably, to enable a selection of cells containing vectors incorporating heterologous DNA. A suitable start and stop signal will generally be present.

One embodiment of the invention relates to a cell comprising the nucleic acid construct of the third aspect of the invention. The cell may be termed a “host” cell, which is useful for the manipulation of the nucleic acid, including cloning. Alternatively, the cell may be a cell in which to obtain expression of the nucleic acid. Representative examples of appropriate host cells for expression of the nucleic acid construct of the invention include virus packaging cells which allow encapsulation of the nucleic acid into a viral vector; bacterial cells, such as streptococci, staphylococci, E.coli, streptomyces and Bacillus Subtilis; single cells, such as yeast cells, for example, Saccharomyces Cerevisiae, and Aspergillus cells; insect cells such as Drosophila S2 and Spadoptra Sf9 cells, animal cells such as CHO, COS, C127, 3T3, PHK.293, and Bowes Melanoma cells and other suitable human cells; and plant cells e.g. Arabidopsis thaliana.

Induction of an expression vector into the host cell can be affected by calcium phosphate transfection, DEAE-dextran mediated transfection, microinjection, cationic—lipid-mediated transfection, electroporation, transduction, scrape loading, ballistic introduction, infection or other methods. Such methods are described in many standard laboratory manuals, such as Sambrook et al, Molecular Cloning, a Laboratory Manual, Second Edition, Coldspring Harbor Laboratory Press. Coldspring Harbor, N.Y. (1989).

Mature proteins can be expressed in host cells, including mammalian cells such as CHO cells, yeast, bacteria, or other cells under the control of appropriate promoters. Cell-free translation systems can be employed to produce such proteins using RNAs derived from the nucleic acid construct of the third aspect of the present invention. Appropriate cloning and expression vectors for use with prokaryotic and eukaryotic hosts are described by Sambrook et al, Molecular Cloning, a Laboratory Manual, Second Edition, Coldspring Harbor Laboratory Press, Coldspring Harbor, N.Y. (1989).

Proteins can be recovered and purified from recombinant cell cultures by well-known methods including ammonium sulphate or ethanol precipitation, acid extraction, anion or cation exchange chromatography, phoshocellulose chromatography, hydrophobic interaction chromatography, affinity chromatography, hydroxylapatite chromatography, high performance liquid chromatography and lectin chromatography. For therapy, the nucleic acid construct e.g. in the form of a recombinant vector, may be purified by techniques known in the art, such as by means of column chromatography as described in Sambrook et al, Molecular Cloning, a Laboratory Manual, Second Edition, Coldspring Harbor Laboratory Press, Coldspring Harbor, N.Y. (1989).

In a fourth aspect, the invention provides a method of treatment of a patient such as a mammal, including human, comprising administering to a recipient a therapeutically effective amount of the nucleic acid construct of the third aspect of the invention. Where the nucleic acid construct is used in the therapeutic method of the invention, the construct may be used as part of an expression construct, e.g in the form of an expression vector such as a plasmid or virus. In such a method, the construct may be administered intravenously, intradermally, intramuscularly, orally or by other routes.

The nucleic acid construct of the third aspect of the invention, and proteins derived therefrom, may be employed alone or in conjunction with other compounds, such as therapeutic compounds, e.g anti-inflammatory drugs, cytotoxic agents, cytostatic agents or antibiotics. The nucleic acid constructs and proteins useful in the present invention are preferably provided in an isolated form, and preferably are purified to hormogeneity.

As used herein, the tern “treatment” includes any regime that can benefit a human or a non-human animal. The treatment may be in respect of any existing condition or disorder, or may be prophylactic (preventive treatment). The treatment may be of an inherited or an acquired disease. The treatment may be of an acute or chronic condition. Preferably, the treatment is of a condition/disorder associated with inflammation. The first nucleic acid sequence of the nucleic acid construct of the third aspect of the invention may encode a protein for use in the treatment of the disorder, including, but not limited to osteoarthritis, scleroderma, renal disease, rheumatoid arthritis, inflammatory bowel disease, multiple sclerosis, atherosclerosis, cancer, or any inflammatory disease.

The nucleic acid construct of the third aspect of the invention may be used therapeutically in the method of the invention by way of gene therapy. Alternatively, protein encoded by the nucleic acid construct may be directly administered as described herein.

Administration of the nucleic acid construct of the third aspect may be directed to the target site by physical methods. Examples of these include topical administration of the “naked” nucleic acid in the form of a vector in an appropriate vehicle, for example, in solution in a pharmaceutically acceptable excipient, such as phosphate buffered saline, or administration of a vector by physical method such as particle bombardment according to methods known in the art.

Other physical methods for administering the nucleic acid construct or proteins of the third aspect of the invention directly to the recipient include ultrasound, electrical stimulation, electroporation and microseeding. Further methods of administration include oral administration or administration through inhalation.

Particularly preferred is the microseeding mode of delivery which is a system for delivering genetic material into cells in situ in a patient. This method is described in U.S. Pat. No. 5,697,901.

The nucleic acid construct according to the third aspect of the invention may also be administered by means of delivery vectors. These include viral delivery vectors, such as adenovirus or retrovirus delivery vectors known in the art.

Other non-viral delivery vectors include lipid delivery vectors, including liposome delivery vectors known in the art.

Administration may also take place via transformed host cells. Such cells include cells harvested from the subject, into which the nucleic acid construct is transferred by gene transfer methods known in the art. Followed by the growth of the transformed cells in culture and grafting to the subject.

As used herein the term “gene therapy” refers to the introduction of genes by recombinant genetic engineering of body cells (somatic gene therapy) or of cells of the germ line (germ-line therapy) for the benefit of the patient. Furthermore, gene therapy can be divided into ex vivo and in vivo techniques. Ex vivo gene therapy relates to the removal of body cells from a patient, treatment of the removed cells with a vector ie, a recombinant vector, and subsequent return of the treated cells to the patient. In vivo gene therapy relates to the direct administration of the recombinant gene vector by, for example, intravenous or intravascular means.

Preferably the method of gene therapy of the present invention is carried out ex vivo.

Preferably in gene therapy, the expression vector of the present invention is administered such that it is expressed in the subject to be treated. Thus for human gene therapy, the promoter is preferably a human promoter from a human gene, or from a gene which is typically expressed in humans, such as the promoter from human CMV.

For gene therapy, the present invention may provide a method for manipulating the somatic cells of human and non-human mammals.

The present invention also provides a gene therapy method which may involve the manipulation of the germ line cells of a non-human mammal.

The present invention therefore provides a method for providing a human with a therapeutic protein comprising introducing mammalian cells into a human, the human cells having been treated in vitro to insert therein a nucleic acid construct according to the third aspect of the invention.

Each of the individual steps of the ex vivo somatic gene therapy method are also covered by the present invention. For example, the step of manipulating the cells removed from a patient with the nucleic acid construct of the third aspect of the invention in an appropriate vector. As used herein, the term “manipulated cells” covers cells transfected with a recombinant vector.

Also contemplated is the use of the transfected cells in the manufacture of a medicament for the treatment of an inflammatory disorder.

A fifth aspect of the invention provides a nucleic acid construct, or protein encoded thereby, according to the third aspect of the invention for use in medicine, preferably for use in gene therapy.

A sixth aspect of the invention provides for the use of the nucleic acid construct according to the third aspect of the invention in the manufacture of a medicament for the treatment of an inflammatory disorder. In this context, the inflammatory disorder may include any one or more of the inflammation associated conditions discussed above.

The present invention also relates to compositions comprising the nucleic acid construct or proteins of the third aspect of the invention. Therefore, the nucleic acid construct of the present invention may be employed in combination with the pharmaceutically acceptable carrier or carriers. Such carriers may include, but are not limited to, saline, buffered saline, dextrose, liposomes, water, glycerol, ethanol and combinations thereof.

The pharmaceutical compositions may be administered in any effective, convenient manner effective for treating a patients disease including, for instance, administration by oral, topical, intravenous, intramuscular, intranasal, or intradermal routes among others. In therapy or as a prophylactic, the active agent may be administered to an individual as an injectable composition, for example as a sterile aqueous dispersion, preferably isotonic.

For administration to mammals, and particularly humans, it is expected that the daily dosage of the active agent will be from 0.01 mg/kg body weight, typically around 1 mg/kg. The physician in any event will determine the actual dosage which will be most suitable for an individual which will be dependant on factors including the age, weight, sex and response of the individual. The above dosages are exemplary of the average case. There can, of course, be instances where higher or lower dosages are merited, and such are within the scope of this invention.

A seventh aspect of the invention provides a fusion protein comprising a LAP and a proteolytic cleavage site wherein the fusion protein is associated with a pharmaceutically active agent.

The invention further provides a nucleic acid construct encoding the fusion protein of the seventh aspect of the invention. The nucleic acid construct preferably comprises a nucleic acid sequence encoding a LAP adjacent a nucleic acid sequence encoding a proteolytic cleavage site. Preferably, the nucleic acid sequence encoding a LAP is suitably operably linked to a nucleic acid sequence encoding a proteolytic cleavage site. The nucleic acid construct encoding the fusion protein may comprise nucleotides 1–861 of FIG. 1 or nucleotides 585–1352 of FIG. 2 or a sequence of nucleotides which has at least 50%, 60%, 70%, 80%, 90%, 95% or 99% identity, using the default parameters of the BLAST computer program provided by HGMP, thereto.

The invention further provides the fusion protein of the seventh aspect of the invention optionally in association with latent TGFβ binding protein (LTBP) described herein.

The fusion protein of the seventh aspect of the invention may be associated with the pharmaceutically active agent by means of a peptide bond linkage. Alternatively, the fusion protein may be associated with the pharmaceutically active agent by means of a chemical linkage e.g. by cross-linking the fusion protein to a chemical compound such as a chemotherapeutic agent, synthetic drug or PNA.

Preferably, the pharmaceutically active agent is linked to the C-terminal end of the amino acid sequence of the proteolytic cleavage site in the fusion protein of the seventh aspect of the invention. More preferably, the pharmaceutically active agent is continuous with the C-terminal residue of the amino acid sequence of the proteolytic cleavage site.

An eighth aspect of the invention provides a process for preparing the fusion protein, and associated pharmaceutically active agent, of the seventh aspect of the invention comprising production of the fusion protein recombinantly by expression in a host cell, purification of the expressed fusion protein and association of the pharmaceutically active agent to the purified fusion protein by means of peptide bond linkage or chemical cross linking.

In a ninth aspect, the invention provides a method of treatment of a patient such as a mammal, including human, comprising administering to a recipient a therapeutically effective amount of the fusion protein, and associated pharmaceutically active agent, of the seventh aspect of the invention. In such a method, the fusion protein and associated pharmaceutically active agent may be administered intravenously, intradermally, intramuscularly, orally or by other routes.

The fusion protein, and associated pharmaceutically active agent of the seventh aspect of the invention may be employed alone or in conjunction with other compounds, such as therapeutic compounds, e.g anti-inflammatory drugs, cytotoxic agents, cytostatic agents or antibiotics.

Preferably, the fusion protein and associated pharmaceutically active agent of the seventh aspect of the invention are directly administered to a patient as described herein.

A tenth aspect of the invention provides a fusion protein and associated pharmaceutically active agent according to the seventh aspect of the invention for use in medicine.

An eleventh aspect of the invention provides for the use of the fusion protein and associated pharmaceutically active agent according to the seventh aspect of the invention in the manufacture of a medicament for the treatment of an inflammatory disorder. In this context, the inflammatory disorder may include arty one or more of the inflammation associated conditions discussed herein.

The present invention also relates to compositions comprising the fusion protein and associated pharmaceutically active agent of the seventh aspect of the invention. Therefore, the fusion protein and associated pharmaceutically active agent may be employed in combination with the pharmaceutically acceptable carrier or carriers. Such carriers may include, but are not limited to, saline, buffered saline, dextrose, liposomes, water, glycerol, polyethylene glycol, ethanol and combinations thereof.

The pharmaceutical compositions may be administered in any effective, convenient manner effective for treating a patients disease including, for instance, administration by oral, topical, intravenous, intramuscular, intranasal, or intradermal routes among others. In therapy or as a prophylactic, the active agent may be administered to an individual as an injectable composition, for example as a sterile aqueous dispersion, preferably isotonic.

The invention also provides a kit of parts comprising a nucleic acid construct of the third aspect of the invention, or a fusion protein and associated pharmaceutically active agent according to the seventh aspect of the invention, and an administration vehicle including, but not limited to, tablets for oral administration, inhalers for lung administration and injectable solutions for intravenous administration.

All preferred features of the second and subsequent aspects of the invention are as for the first aspect mutatis mutandis.

The present invention will now be described by way of example only with reference to the accompanying figures wherein:

FIGS. 1A and 1B show nucleotide (SEQ ID NO:19) and corresponding amino acid (SEQ ID NO:20) sequence of the LAP-mIFNβ construct. The boxed sequence corresponds to the sequence of the MMP cleavage site including linker sequence;

FIGS. 2A and 2B show nucleotide (SEQ ID NO:21) and corresponding amino acid (SEQ ID NO:22) sequence of the mIFNβ-LAP construct. The boxed sequence corresponds to the sequence of the MMP cleavage site including linker sequence;

FIGS. 3A and 3B show amino acid sequences of the precursor domain of TGFβ1 (SEQ ID NO:23), 2 (SEQ ID NO:24), and 3 (SEQ ID NO:25) (human, Hu), TGFβ4 (SEQ ID NO:26) (chicken, Ck), TGFβ (SEQ ID NO:27) (frog, Fg). Arrows indicate the position of the proteolytic processing resulting in cleavage of the signal peptide of TGFβ1 and of the mature TGFβs. N-linked glycosylation sites are underlined, as is the integrin cellular recognition sequence (Roberts and Sporn, Peptide Growth Factors and their Receptors: Sporn, M B and Roberts, A B, Springer-Verlag, Chapter 8, 422 (1996));

FIGS. 4A–4D show the sequences (SEQ ID NO:28 to SEQ ID NO:100) of protein cleavage sites of matrix metalloproteinases (MMPs) (Nagase and Fields, Biopolymers, 40, 399–416 (1996));

FIGS. 5A and 5B show schematic representation of the fusion proteins used in this study and their putative folding. (A) Primary structure of recombinant latent proteins. The linear sequence arrangement of the LAP, MMP and mIFNβ constituents in the two configurations used in this study, LAP-mIFNβ and mIFNβ-LAP, is shown. The box at the amino terminal end of LAP-mIFNβ and mIFNβ-LAP depicts the native signal sequence peptide for secretion of either TGFβ or mIFNβ respectively. (B) Putative folding and interactions with LTBP of latent cytokine. In LTBP, the EGF like repeats are shown as small squares, the cysteine-rich repeats and hybrid domain as circles, and the ‘hinge region’ which is sensitive to proteolytic cleavage is shown as a solid black line. Disulphide bonds are shown as solid grey lines;

FIG. 6 shows detection of recombinant fusion proteins in supernatants of CHO cells. Non denaturing SDS-PAGE of supernatants from CHO cells (lane 1), LAP-mIFNβ transfected (lane 2) and mIFNβ-LAP (lane 3). Position of the double bands of newly expressed fusion proteins are marked by a double arrow. Position of the molecular weight markers (M.W.) in kDa is shown;

FIG. 7 shows immunoprecipitation of CHO cell supernatants with anti-LAP antibody and cleavage with MMP1 and MMP3. LAP-mIFNβ (lanes 1, 3 and 5) and. mIFNβ-LAP (lanes 2, 4 and 6). Untreated controls (lanes 1 and 2), treated with MMP3 (lanes 3 and 4), treated with MMP1 (lanes 5 and 6). SDS PAGE was performed under denaturing conditions. The positions of LTBP and fusion proteins, are indicated by arrows. The arrows marked with an asterisk (*) indicates the presence of MMP cleavage products. Position of the molecular weight markers (M.W.) in kDa is shown;

FIGS. 8A–8B show immunoprecipitation of MTX-selected CHO cell supernatants with anti-LAP and anti-mIFNβ antibodies and cleavage with MMP1, MMP3 and synovial fluid from rheumatoid arthritis patients. (A). LAP-mIFNβ and (B). mIFNβ-LAP. Untreated supernatants (lanes 1 and 5), MMP1 treated (lanes 2 and 6). MMP3 treated (lanes 3 and 7) and rheumatoid arthritis synovial fluid treated (lanes 4 and 8). Immunoprecipitated with anti-LAP (lanes 1–4) and anti-IFNβ monoclonal antibody (lanes 5–8). The positions of LTBP and fusion protein are indicated by arrows. The arrows marked with an asterisk (*) indicate the presence of MMP cleavage products;

FIGS. 9A and 9B show kinetics of IFN activity following incubation in medium alone or with rheumatoid arthritis synovial fluid. (A). LAP-mIFNβ; (B). mIFNβ-LAP.

FIGS. 10A and 10B show the inhibition of collagen-induced arthritis by DNA injection with LAP-IFNbeta. Panel A shows hind paw swelling and Panel B shows clinical score development from time of boost with collagen type II.

The invention is now described with reference to the following non-limiting examples;

EXAMPLE 1 Construction of LAP-mIFNβ and mIFNβ-LAP

Methods

Cloning of GS-MPG-GS Liker into EcoR1-Not1 Sites of pcDNA3

A vector was constructed by inserting the GS-MMP-GS linker into EcoR1-Not1 cleaved pcDNA3. pcDNA3 is an expression vector (from Invitrogen) which comprises the human cytomegalovirus immediate early promoter and enhancer, together with RNA processing signals allowing transcription.

Double stranded deoxyoligonucleotide coding for the sequence GLY GLY GLY GLY SER PRO LEU GLY LEU TRP ALA GLY GLY GLY SER (SEQ ID NO: 1) was designed as follows:

Sense oligo:

Sense oligo: 5′ AATTCGGGGGAGGCGGATCCCCGCTCGGGCTTTGGGCGGGAGGGGGC TCAGC 3′ (SEQ ID NO: 2)

Antisense oligo:

Antisense oligo: 5′ GGCCGCTGAGCCCCCTCCCGCCCAAAGCCCGAGCGGGGATCCGCCTC CCCCG 3′ (SEQ ID NO: 3)

Synthetic deoxyoligonucleotides were purchased from Life Technologies Ltd. (Paisley, UK). Annealed deoxyoligonucleotides were cloned into EcoR1-Not1 cleaved pcDNA3 (Invitrogen, Groningen, The Netherlands). The recombinant clone lost its EcoRV site and gained an additional BamH1 site. Plasmid clones were assessed by Southern blot hybridization with end labeled oligos. The clone was referred to as GS-MMP-GS. Restriction enzymes and DNA modifying enzymes were obtained from New England Biolabs, Hitchin, UK.

Construction of LAP (TGFβ) at NT₂ End Followed by GS-MMP-GS and Mature IFNβ

A vector comprising LAP (TGFβ) followed by GS-MMP-GS and mature IFNβ was constructed as follows:

LAP from TGFβ as a 5′ unit (with signal peptide) with HindIII and EcoR1 ends was cloned by PCR from plasmid TGFβ-Babe neo (Chernajovsky et al., Gene Ther. 4, 553–559 (1997)). The following primers were used:

Sense Primer 5′ CCAAGCTTATGCCGCCCTCCGGGCTGCGG 3′ (SEQ ID NO: 4) Antisense 5′ CCGAATTCGCTTTGCAGATGCTGGGCCCT 3′ primer (SEQ ID NO: 5)

After PCR, the product was phenol extracted, ends filled-in with Klenow and digested with HindIII and EcoR1. The 820 bp product was cloned into GS-MMP-GS plasmid cut with the same enzymes. The clone was referred to as TGFβ-GS-MMP-GS linker. Mature mIFNβ (from mouse) with 5′ Not1 and 3′ Xba1 sites was synthesized by PCR from clone Aphrodite (Triantaphyllopoulos et al., Gene Ther. 5, 253–263 (1998)) using the following primers:

Sense 5′ CGCGGCCGCAATCAACTATAAGCAGCTCCAG 3′ primer (SEQ ID NO: 6) Antisense 5′ GGTCTAGATCAGTTTTGGAAGTTTCTGGTAAG 3′ primer (SEQ ID NO: 7)

After PCR, the fragment was phenol extracted, ends filled-in with Klenow and digested with Not1 and Xba1. The LAP-mJFNβ clone was obtained by cloning the fragment into the Not1 and Xba1 sites of TGFβ-GS-MMP-GS linker plasmid.

The nucleotide and amino acid sequence of the LAP-mIFNβ insert is shown in FIG. 1.

Construction of mIFNβ at NH₂ End Followed by GS-MMP-GS and Mature LAP (TGFβ)

A vector comprising mature mIFNβ followed by GS-MMP-GS and LAP (TGFβ) was constructed as follows:

Pre-IFNβ with signal peptide and without stop codon was synthesised by PCR as above using the following primers:

Sense primer 5′ CCAAGCTTATGAACAACAGGTGGATCCTC 3′ (SEQ ID NO: 8) Antisense 5′ CCGAATTCGTTTTGGAAGTTTCTGGTAAG 3′ primer (SEQ ID NO: 9)

After PCR synthesis, phenol extraction, filling-in with Klenow fragment of DNA polymerase, the DNA product was digested with HindIII and EcoR1 and cloned into plasmid pCDNA3 GS-MMP-GS in same sites. The clone was referred to as IFNβ- GS-MMP-GS linker. Mature LAP (TGFβ) with stop codon was synthesised by PCR as above using the following primers:

Sense 5′ CGCGGCCGCACTATCCACCTGCAAGACTATC 3′ primer (SEQ ID NO: 10) Antisense 5′ GGTCTAGATCAGCTTTGCAGATGCTGGGCCCT 3′ primer (SEQ ID NO: 11)

After PCR and phenol extraction, the ends were filled-in with Klenow and digested with Not1 and Xba1. The mIFNβ-LAP clone was obtained by cloning the PCR fragment into the same sites of plasmid IFNβ-GS-MMP-GS. The nucleotide and amino acid sequence of the mIFNβ-LAP insert is shown in FIG. 2.

Cloning of Porcine LAP in Front of mIFNβ

Mutated porcine cDNA, mutated at Cys to Ser (223/225), as plasmid pPK14 (Sanderson et al., Proc. Natl. Acad. Sci. USA, 92, 2572–2576 (1995), was kindly provided by P. J. Wirth, NIH, Bethesda, Md. Cloning of porcine LAP was carried out by PCR, using the following set of primers:

-   Sense primer starting at signal peptide was 5′     CGCCCATGGCGCCTTCGGGGCCT 3′ (SEQ ID NO: 12). This primer has a     modified sequence around the initiator ATG to create a Nco1 site. -   Antisense primer 5′ CCGAATTCGCTGTGCAGGTGCTGGGCCCT 3′ (SEQ ID NO: 13)

Following PCR synthesis, the PCR product was end-filled with Klenow-DNA polymerase, cut with EcoR1 , cloned into LAP-mIFNβ plasmid cut with HindIII (filled-in) and then cut with EcoR1 (exchanging human LAP). The construct was named PorcLap-mIFNβ.

Results

Structural Considerations

In order to develop a latent-cytokine using the LAP domain of TGFβ fusion proteins in two conformations, one containing LAP at the amino terminal end of mouse IFNβ (see FIG. 1) and another at its COOH end (see FIG. 2), were constructed.

To avoid processing of the LAP-mIFNβ protein at Arg 278 of LAP, LAP spanning amino acids Met 1-Ser 273 was cloned. This sequence was followed by a flexible linker (GGGGS, SEQ ID NO: 14), a putative MMP9 (Peng et al., Human Gene Therapy, 8, 729–738 (1997); Ye et al., Biochemistry, 34, 4702–4708 (1995)) or putative MMP1 (Nagase and Fields, Biopolymers, 40, 399–416 (1996)) cleavage site (PLGLWA, SEQ ID NO: 15 and another flexible portion (GGGGSAAA, SEQ ID NO: 16) followed by mature mIFNβ (starting at amino acid Ile-22). Embedding the MMP cleavage site in a hydrophilic area should facilitate access to enzymatic attack. The core of the cleavage site (PLGL, SEQ ID NO: 17) has been shown to be cleaved as a peptide by MMP2 and in a different version (PLGI, SEQ ID NO: 18) also by MMP3, MMP7 and MMP8 (Nagase and Fields, Biopolymers, 40, 399–416 (1996)).

The IFNβ-LAP molecule consisted of the precursor mIFNβ sequence where its stop codon was mutated to allow read through the flexible linker and MMP site followed by the mature sequence of LAP (from Leu-29 to Ser-273).

The unprocessed LAP-mIFNβ (SEQ ID NO:20) and mIFNβ-LAP (SEQ ID NO:22) fusion proteins have an expected molecular weight of 52,375 and 51,768 Daltons respectively. The primary sequence of these fusion proteins contains four possible N-glycosylation sites. A schematic representation of the primary structure and putative folding of these proteins and their possible interaction with LTBP is shown in FIG. 5. On the right panel of FIG. 5B the folding of LAP-mIFNβ is shown resembling the folding of native TGFβ. Near the amino terminal end (N) of the LAP-mIFNβ, Cys 33 interacts with the third 8-cysteine-rich repeat of LTBP, whilst Cys 224 and 226 are expected to dimerize the protein by intermolecular disulphide bonds (Saharinen et al., Cytokine and Growth Factors, 10, 99–117 (1999)). On the left panel of FIG. 5B, the structure of mIFNβ-LAP is shown. Cys 33 is now located behind the MMP cleavage site and Cys 224 and 226 are closer to the carboxy (C) end of the protein.

EXAMPLE 2 Cell Transfection Studies

Methods

Transfection into DHFR-Deficient Chinese Hamster Ovary (CHO) Cells

Dihydrofolate reductase (DHFR)-deficient CHO cells were maintained in HAM-F12 medium (Life Technologies Ltd., Paisley, UK) with 10% fetal bovine serum (FBS) (Life Technologies Ltd.), penicillin/streptomycin and glutamine.

pcDNA3 plasmids (20 μg) expressing LAP-mIFNβ or mIFNβ-LAP were each linearized with PvuI and ligated separately with PvuI cut pSV₂DHFR (1 μg) (Chernajovsky et al., DNA, 3, 297–308 (1984)). After phenol extraction, the plasmids were ligated in 300 μl with T4DNA ligase al 16° C. for 3 days. The DNA was precipitated in 0.4 M NH₄ acetate and resuspended in water to be added as 1 ml calcium phosphate co-precipitate on 0.5×10⁶ CHO cells on 9 cm plates seeded 24 hrs earlier. 4 hrs later, the cells were treated with 10% glycerol in HAM-F12 without FBS, washed in FBS-free media and left to recover for 48 hrs. Transfected cells were trypsinized and split into six 9 cm plates. Selection was carried out in Alpha-DMEM medium without nucleosides (PAA Laboratories, Linz, Austria), 10% dialyzed FBS (PAA Laboratories) and 1 mg/ml G418 (Geneticin, from Life Technologies Ltd.). Selection media was changed twice a week. Cell clones appeared 2–3 weeks later and were maintained as a population (Chemajovsky et al., DNA, 3, 797–308 (1984)).

For gene amplification, cells were selected additionally with methotrexate (MTX) (Sigma, Poole, UK) at 50 nM (LAP-mIFNβ) or 12.5 nM (mIFNβ-LAP) respectively. Cell clones were isolated by ring cloning and expanded in selection media.

IFNβ Biological Assay

Mouse IFNβ biological activity was assessed by inhibition of the cytopathic effect of EMC vires (kindly provided by I. Kerr, Imperial Cancer Research Fund, London) infection in mouse LTK⁻ cells using doubling dilutions of cell supernatants as described (Triantaphyllopoulos et al., Gene Theor. 5, 253–263 (1998)). Where indicated, serum-free CHO supernatants were concentrated by centrifugation using Vivaspin filters (Sartorious, Goettingen, Germany) with a cut off of 30,000 kDa.

Metbolic Labelling of CHO Cells

Confluent plates of permanently transfected cells or non-transfected CHO cells were washed with cysteine-methionine free medium (Life Technologies Ltd.) containing 10% dialyzed FBS and supplemented with thymidine, glutamine, penicillin/streptomycin and 150 μg/ml L-proline. Labelling was either overnight or for 48 hrs in the presence of ³⁵S-methionine-cysteine mix (Amersham-Pharmacia Biotech, Bucks, UK) at 1 Ci/mmol using 250 mCi/plate in 5 ml media.

At the end of the labelling period, supernatants were collected, cell debris spun down and clear supernatants supplemented where indicated with serine-protease inhibitors (SPI) (pepstatin-A at 10 μg/ml, aprotinin at 1 μg/ml, chymostatin at 10 μg/ml, leupeptin at 10 μg/ml and AEBSF (4-(2-aminoethyl)benzene sulphonyl-fluoride, HCl) at 200 μM (all from Calbiochem, Beeston, UK). These supernatants were frozen at −70° C. until used for immunoprecipitation studies.

Immunoprecipitation

Supernatants from metabolically labelled cells were pre-cleared with (400 μl) Protein-G-Sepharose (Amersham Pharmacia Biotech) equilibrated in PBS with 0.1% NP40 (50% beads/vol) (BDH, Poole, UK). Supernatants containing 25×10⁶ cpm of trichloroacetic acid (TCA) (Sigma) total precipitated protein were used (approximately 5–7 ml of cell supernatants). Afer end-over-end mixing for 4 hrs at 4° C., protein-G Sepharose was removed by centrifugation (2000 RPM, 5 min). The cleared supernatant was incubated with either goat-anti-human-LAP antibody (R&D Systems, Oxon, UK at 0.9 μg/ml), or monoclonal rat-anti-mIFNβ (7F-D3, AMS, Abingdon, UK, at a dilution of 1/250) for 3–4 hrs at 4° C.

The antigen-antibody complexes were then bound to Protein-G-Sepharose (700 μl of 50% solution) by mixing overnight at 4° C. rolling end-over-end. Frotein-G-Sepharose beads were washed three times with 5 ml 0.1% NP40 in PBS. Proteins bound to beads were split into fractions of 50 μl beads in small tubes and either directly resuspended in Laemmli-loading buffer or used in MMPs reactions prior to SDS-PAGE in 10% acrylamide gel. Alternatively, supernatants were treated with MMPs and then immunoprecipitated. Gels were fixed for 30 min. in 7% acetic acid and 10% methanol and treated with 1 M sodium salicylate before drying and exposing to autoradiography with X-ray film. Coloured protein molecular weight markers were from Amersham-Pharmacia Biotech.

Supernatants from MTX selected cells were treated with MMPs or synovial fluid from rheumatoid arthritis patients (RA/SF: 1/5) overnight, the reactions stopped with 10 mM EDTA and then immunoprecipitated.

MMP Digestion

Recombinants pro-MMP9 (kindly provided by R. Fridman, Wayne University, Detroit) or active MMP1 and MMP3 (kindly provided by H. Nagase, Kennedy Institute of Rheumatology, London) were incubated overnight at 37° C. with immunoprecipitated supernatants from CHO cells in 20 mM TrisHCl pH 7.4, 5 mM CaCl₂, 140 mM NaCl and 0.1% Brij 35 (all from Sigma) in 50 μl at 1 μg/ml or were directly added to cell supernatants (at 4 μg/ml). Aminophenylmercuric acetate (APMA) (Sigma) at 10 μM was used in certain experiments to activate pro-MMP9 overnight at 37° C. (Ogata et al., J. Biol. Chem. 270, 18506–18511. (1995)).

Results

TABLE 1 Biological assay of mIFNβ Sample Antiviral activity (U/ml) Non transfected 0 mIFNβ-LAP 210 LAP-mIFNβ 0

Mean Value of Triplicate Assay

LAP-mIFNβ and mIFNβ-LAP recombinant proteins were expressed in dihydrofolate reductase deficient chinese hamster ovary (DHFR⁻ CHO) cells (clone CHO-K1) after permanent co-transfection of linearized plasmids with the DHFR plasmid (pSV₂DHFR) (Chernajovsky et al., DNA, 3, 297–308 (1984)) and selection both in G418 and dialyzed serum.

As shown in Table 1, mIFNβ-LAP was secreted having a low residual biological activity whilst LAP-mIFNβ was completely “latent” or inactive. The level of protein expression was similar as confirmed by western blotting with an anti-LAP antibody (not shown).

Biochemical Characterization of Recombinant Proteins

Secreted proteins from permanently transfected cells were metabolically labeled with ³⁵S-methionine and cysteine. Both LAP-mIFNβ and mIFNβ-LAP labeled proteins showed two major bands above 97 kDa in non-reducing conditions that were not seen in supernatants from CHO non-transfected cells (FIG. 6).

Upon immunoprecipitation with anti-LAP antibody, LAP-mIFNβ and mIFNβ-LAP supernatants showed three bands one at 57 kDa another at 135 kDa and another minor component at around 75 kDa in reducing conditions FIG. 7. The 135 kDa protein is probably the CHO-derived (LTBP) which is di-sulphide linked to LAP (Saharinen et al., Cytokine and Growth Factors, 10, 99–117 (1999))

The minor 75 kDa component (FIG. 7 lanes 1, 3 and 5) becomes the major component recognised by anti-LAP antibody upon gene amplification with MTX (FIG. 8A, lanes 1–4). Interestingly, the monoclonal anti-mIFNβ antibody does not seem to recognize the 75 kDa glycosylated product (FIGS. 8A and 7, lanes 5–8) and the anti-LAP poorly recognizes it in the mIFNβ-LAP configuration (FIG. 8A, lanes 5–8) of the protein indicating that the fusion proteins have different conformations. Similar results were obtained when the immunoprecipitated material was treated enzymaticly (with MMP1 or MMP3) and then separated on SDS-PAGE. The difference in conformation may explain the different sensitivity of these proteins to different MMPs (see below) and their degree of latency.

The predicted molecular weight of the secreted recombinant proteins is 49,376 Da for both LAP-mIFNβ and mIFNβ-LAP. The increased molecular weight determined, may be due to glycosylation of these proteins, Incubation of immunoprecipitated proteins with N-glycosidase F, yields two major proteins of molecular weights 70 kDa and 51 kDa which correspond to LTBP and fusion protein respectively (not shown).

MMP Cleavage of Recombinant Proteins

Immunoprecipitated complexes were treated overnight with single MMPs or their combination. As shown in FIG. 7, pro-MMP9 or MMP1 did not cleave very efficiently the 57 kDa recombinant product. MMP1 was capable of cleaving the glycosylated form of the fusion protein (FIG. 7, lanes 3 and 4; FIG. 8A, lane 2) whilst MMP3 was capable on its own to digest it into several discreet bands FIG. 7 lanes 5 and 6; FIGS. 8A and 8B, lanes 3 and 7).

The LTBP band was also cleaved by MMP3 (FIG. 7, lane 3 and 4 and FIG. 8B, lanes 3 and 7) giving rise to a 78 kDa product. Two of the digested products (MW 36 kda and 20 kDa) correspond to the expected LAP and IFNβ polypeptide fragments respectively.

The specificity shown in these in vitro experiments may not fully reflect the antiviral activity measured in cell supernatants following MMP treatment. Cell supernatants were already activated to a certain extent indicating that other proteolytic enzymes present in the supernatant may activate the latent-cytokine moiety. Increased proteolysis of the fusion polypeptides after immunoprecipitation using a combination of recombinant pro-MMP9 with MMP1 or MMP3, or with APMA-activated pro MMP9 on its own in vitro (not shown) was not apparent.

Activation of Latent IFNβ by MMPs

TABLE 2 mIFNβ biological activity (U/ml) from concentrated supernatants treated with MMPs pro- pro- pro- MMP9 + MMP9 + MMP9 MMP1 MMP3 MMP1 MMP3 mIFNβ- Exp. 1 1,305 1,740 870 3,481 7,740 LAP LAP- Exp. 1 163 217 109 435 217 mIFNβ Exp. 2 109 N.D. N.D. 435 217 Concentrated serum-free supernatants were treated with MMPs as shown. N.D. = not done

TABLE 3 mIFNβ biological activity (U/ml) from non-concentrated supernatants from MTX-amplified CHO-transfected cells. TREATMENT pro- pro-MMP9 + pro-MMP9 + RA- none MMP1 MMP3 MMP9 MMP1 MMP3 S.F. no SPI. LAP-mIFN 288 6144 9216 288 1536 768 1152 768 (50 nM MTX) mIFNβ-LAP 1536 6144 3072 1536 1536 4608 6144 3072 (12.5 nM MTX)

Supernatants were supplemented with or without (last row) serine protease inhibitors (SPI) and MMPs as indicated. The RA.SF is the same used also in FIG. 6.

The non-concentrated supernatant had approximately 210 U/ml of antiviral activity corresponding to about 0.3 ng protein (Iwakura ey al. J. Biol. Chem. 253, 5074–5079 (1978)). Cell supernatants were concentrated 100 fold by centrifugation through porous membranes in order to allow for MMP activity at a higher substrate concentration.

Upon concentration, even the LAP-IFNβ supernatant demonstrated antiviral activity without any further treatment (Table 3). This result may be explained by the fact that CHO cells are reported to secrete a variety of proteinases (Goldman et al., Cytotechnology, 23, 103–111 (1997); Satoh et al., Cytotechnology, 13, 79–88 (1993)) including MMPs (Masure et al., Eur. J. Biochem. 244, 21–30 (1997)). Possibly, some natural inhibitors of MMPs (TIMPs) may be removed from the proteinases by this concentration method facilitating their activity.

Supernatants from non-transfected CHO cells had no biological activity even after treatment with MMP's or rheumatoid arthritis synovial fluid (RA-S.F) at ⅕ of final volume (data not shown).

Addition of MMP1 to concentrated supernatants slightly increased the biological activity whilst addition of both MMP1 and pro-MMP9 or MMP3 and pro-MMP9 did the same (see Table 2). Interestingly, treatment of IFNβ-LAP with MMP1 and pro-MMP9 lead to a 3–6 fold increase in antiviral activity indicating that further activation of this molecule may be obtained.

Using non-concentrated supernatants from MTX amplified cells, it was demonstrated that both MMP1 and MMP3 can activate LAP-IFNβ by 21 and 32 fold respectively (Table 3), and that synovial fluid from rheumatoid arthritis patients can activate it up to 4 fold (Table 3). mIFNβ-LAP can also be activated but as previously shown (Table 1) its level of basal activity is high. FIGS. 8A and 8B (lanes 4 and 8) show that synovial fluid from rheumatoid arthritis patients can also cleave the fusion proteins to discrete products of 36 kDa and 20 kDa corresponding to LAP and IFNβ respectively.

As mentioned above, incubation of the supernatants without protease inhibitors yields increased biological activity, indicating that secreted enzymes from the CHO cells may cleave it. The sensitivity of the two fusion proteins to the presence of MMP9 is different showing that mIFNβ-LAP may be activated whilst for LAP-IFNβ, MMP9 appears inhibitory, perhaps inducing its further degradation by other enzymes present in the CHO cell supernatants.

Activation of Latent IFNβ with Samples from Inflamed Sites

FIG. 8 and Table 3 showed that synovial fluid from rheumatoid arthritis patients is capable of activating the latent cytodine.

To assess whether long term incubation of the latent cytokine with these samples may lead to its degradation or accumulation into active compound, both LAP-mIFNβ and mIFNβ-LAP were incubated for up to five days at 37° C. in the presence or absence of synovial fluid from rheumatoid arthritis patients and then applied to the IFN biological assay. Empty symbols are samples incubated in medium with 10% FIS whilst fdled symbols are samples incubated with ⅕ of vol/vol of rheumatoid arthritis synovial fluid (RA.SF).

Samples were taken at 24 hrs intervals. FIG. 9 shows that incubation over this extended period resulted in increased activity i.e. activation of the LAP-mIFNβ up to 10 fold during the first 24–48 hrs with a steady decrease afterwards. The mIFNβ-LAP failed to be activated and only a decrease in its activity was seen. This result clearly indicates that the LAP-IFNβ conformation can have potential therapeutic uses.

No activation was seen using mIFNβ-LAP. Overall, in both cases the protein activity decreased over time as proteases found in the medium of the cells are capable of degrading the engineered proteins.

To determine whether activation of the latent cytokine could be corroborated by using samples from another pathological inflammatory condition, cerebrospinal fluid from experimental allergic encephalomyelitis monkeys were tested. After overnight incubation, two out of the three samples tested increased the biological activity of the fusion proteins up to four times higher than their parallel serum samples (data not shown), indicating that site-specific activation may be obtainable.

EXAMPLE 3

In order to assess whether the latency detected with LAP-mIFNβ required the formation of a putative closed shell structure bounded by the dimeric disulplide linked LAP, a fusion protein was constructed using the porcine LAP that was mutated in Cys 223 and 225 to Ser.

Methods

Preparation of Construct

Porcine LAP was cloned by PCR as set out in Example 1. The primers used were as set out in Example (cloning of porcine LAP). The cloned porcine LAP was mutated in Cys 223 and 225 to Ser (Sanderson et al., Proc. Natl. Acad. Science, 92, 2572–2576 (1995)).

Transient Transfection into Monkey COS-7 Cells

20 μg plasmid DNA, PorcLAP-mIFNβ and mIFNβ-LAP & LAP-mIFNβ controls, were transfected by the calcium phosphate co-precipitation method in duplicates to 0.5×106 COS-7 cells seeded in 9 cm plates as described above. The DNA co-precipitate was left on the cells overnight instead of 4 hrs. COS-7 cells were grown in DMEM with antibiotics and 10% FBS. 48 hrs after glycerol shack the supernatants were collected for IFN antiviral assay.

Results

The mutated construct PorcLAP-mIFNβ was compared to the other constructs for its biological activity in vitro following transient transfection to COS-7 cells. Table 4 shows that PorcLAP-mIFNβ was as active as mIFNβ-LAP in this assay demonstrating that.

TABLE 4 Plasmid Antiviral activity (U/ml) LAP-mIFNβ 0 PorcLAP-mIFNβ 256 mIFNβ-LAP 256

Results shown are representative of one of two experiments.

Conclusion

The results show that disulphide bonds at positions 223 and 225 are required for latency of LAP-mIFNβ.

EXAMPLE 4

Cloning and Expression of Human IFNβ, IL-2 and IL-10-LAP Fusion Proteins

Construction of human IFNβ-MMP-LAP and LAP-MMP-human IFNβ will facilitate testing of the expression of these constructs in CHO cell lines and subsequent testing of the activity of the expressed product with some human cell lines in vitro and in vivo.

Constructs comprising human IL-2 and IL-10 will be expressed and tested as above. Purification of the expressed fusion proteins will utilise a poly His tail as an anchor for purification schemes. Such purification schemes are well known in the art.

EXAMPLE 5

Collagen Induced Arthritis (CIA) and DNA Injection

DBA/1 mice were immunised with couagen type II (CII) as described in Dreja, et al. Arthritis and Rheumatism, 43, 1698–1708 (2000) and 3 weeks later were boosted with CII in incomplete Freund's adjuvant. 100 micrograms plasmid DNA in PBS was injected intramuscularly at 3 sites in the qudriceps, on the day of arthritis onset and mice were scored every other day for clinical arthritis and hind paw swelling was measured with calipers as described (Dreja, et al. Arthritis and Rheumatism, 43, 1698–1708, (2000)),

In an arthritis model (CIA), the relative effectiveness of the latent cytokine (LAP-mIFNβ) versus the active versions (PorcLAP-mIFNβ and mIFNβ-LAP) was measured. The latent LAP-mIFNb shows greater efficacy than either of the active moieties, mIFNb-LAP or PorcLAP-IFNb, as compared with the control treated with pCDNA3 empty plasmid vector.

It was found that when delivered by gene therapy by intramuscular injection the latent cytokine was more efficacious in the treatment of established disease.

Conclusions

It has been shown herein that an active cytokine molecule could be designed to become “latent” by addition of the latency domain of TGFβ either at its NH₂ or COOH termini. The cytokine IFNβ was used in the experimental models.

The LAP domain of TGFβ conferred “latency” to IFNβ which could be abrogated by incubating the fusion protein with MMPs. Possibly the latency has to do with steric hindrance by LAP on the interaction between the IFNβ moiety with its cellular receptors. Despite the fact that both NH₂ and COOH ends of the molecule are in close proximity in the crystal structure of IFNβ, a better ‘shell’ appeared to be conferred by fusing the LAP domain at its NH₂ terminus as it is found in TGFβ itself. It is plausible that with other cytokines this may be different, depending on their tertiary structure and the surface of interaction with their receptors.

The MMP site located between LAP and IFNβ could be cleaved in vitro by MMP-3 and MMP-1. MMP-3 and MMP-1 have homologous regions in their active site (Massova et al., J. Mol. Model. 3, 17–30 (1997)). It is quite plausible that other MMPs will also cleave this site as shown by the activation occurring in concentrated serum-free supernatants of CHO cells (Table 2). Expression of MMPs is very tightly regulated (Han et al., Autoimmunity, 28, 197–208 (1998)). MMPs are active during tissue remodelling, wound healing and inflammation (Kubota et al., J. Oral & Maxillofacial Surgery, 55, 20–27 (1997); Van Meurs et. al., Arthritis & Rheumatism, 42, 2074–2084 (1999); Leppert et al., Brain, 121, 2327–2334 (1998); Uhm et al., Annals of Neurology, 46, 319–324 (1999); Louis et al., Clin. Exp. Immunol. 120, 241–246 (2000); Baugh et al., Gastroenterology, 117 814–822 (1999)). MMPs are also necessary for tumour cells to invade surrounding tissue. Indeed expression of tissue inhibitor of Metalloproteases (TIMPs) can inhibit tumour invasion and metastasis (DeClerck et al., Cancer Res. 52, 701–708 (1992)). MMP9 could not cleave the fusion proteins. Using fluorogenic peptide substrates with the sequence PLGLWA-d-R the value of rate of hydrolysis (kcat/Km) of matrix metalloproteinases appear to follow the order MMP9>MMP2>MMP7>MMP3>MMP1 (Nagase and Fields, Biopolymers, 40, 399–416 (1996)). This discrepancy in hydrolysis sensitivity between the peptide substrate and the engineered proteins used in this study may be related to their tertiary structure.

The “latent” cytokine design appears to have several advantages. Firstly, upon administration the cytokine, it does not appear to be rapidly taken up by cells bearing its receptors, this may have impact on its toxicity and may provide for a longer half-life. LAP-containing TGFβ has been shown to have an increased half-life in vivo Wakefield et al., J. Clin. Invest. 86, 1976–1984 (1990)). Thus, as a consequence, therapeutic systemic administration could be closed at lower concentrations.

Secondly, both LAP and LTBP may facilitate the interaction of the latent cytokine with the extracellular matrix.

Thirdly, the cytokine may not typically be released to interact with cellular receptors unless inflammatory or tissue remodelling processes are taking place involving MMP activity. Such activity is found in osteoarthritis, rheumatoid arthritis (Kubota et al., J. Oral & Maxillofacial Surgery, 55, 20–27 (1997); Van Meurs et al., Arthritis & Rheumatism, 42, 2074–2084 (1999); Singer et al., Osteoarthritis & Cartilage, 5, 407–418 (1997)) and other types of chronic disease such as inflammatory bowel disease (Loius et al., Clin. Exp. Immunol, 120, 241–246 (2000); Baugh et al., Gastroenterology, 117, 814–822 (1999)), multiple sclerosis (Leppert et al., Brain, 121, 2327–2334)), atherosclerosis (Libby, Vascular Medicine, 3, 225–229 (1998)) and during cancer invasion (DeClerck et al., Cancer Res. 52, 701–708 (1992)).

It could be argued that upon cleavage, time release of LAP could have antagonistic effects for TGFβ, as it has been shown that in vitro LAP is capable of inhibiting active TGFβ action (Wakefield et al., Growth Factors, 1, 203–218 (1989)). However, it is expected that our LAP-fusion protein may exert its action at sites of inflammation where free radicals abound. It has been shown that nitrosylation of LAP disables its capacity for binding to TGFβ (Vodovotz et al., Cancer Res. 59, 2142–2149 (1999)). Thus it is unlikely that in sites of inflammation the released LAP will antagonise TGFβ function.

Additional modifications to the MMP cleavage site may provide for additional tissue specificity. 

1. An isolated nucleic acid construct encoding a fusion protein wherein said nucleic acid comprises: a first nucleic acid sequence encoding a biologically active protein; a second nucleic acid sequence encoding a heterologous latency associated peptide (LAP) comprising the precursor domain of TGFβ; and a third nucleic acid sequence encoding a proteolytic cleavage site between the first and second nucleic acid sequences.
 2. The nucleic acid construct of claim 1, wherein said biologically active protein comprises a growth factor; a differentiation factor, a cytokine, a chemokine, a trophic factor, a cytokine inhibitor, a cytokine receptor, a free-radical scavenging enzyme, a tissue inhibitor of a metalloproteinase, or an inhibitor of a serine protease.
 3. The nucleic acid construct of claim 1, wherein said first nucleic acid sequence encodes an interferon.
 4. The nucleic acid construct of claim 1, wherein said first nucleic acid sequence encodes an interleukin.
 5. The nucleic acid construct of claim 1, wherein said latency associated peptide comprises the precursor peptide of TGFβ-1,2,3,4 or
 5. 6. The nucleic acid construct of claim 1 or claim 2, wherein said proteolytic cleavage site is a matrix metalloproteinase (MMP) cleavage site.
 7. A vector comprising the nucleic acid construct of claim
 1. 8. An isolated host cell comprising the vector of claim
 7. 9. A process for preparing a recombinant fusion protein comprising a biologically active protein, a LAP, and a proteolytic cleavage site, comprising culturing the host cell of claim 8 under conditions such that said fusion protein is expressed and recovering said fusion protein. 